4. Input files¶
FusionVet needs two types of input files.
4.2. gene fusion file¶
The gene fusion file is a plain text file with 8 columns separated by space or tab (The first 4 columns describe the “chrom”, “transcription_start”, “transcription_end” and “symbol” of gene-1, the other 4 columns describe the same information for gene-2. Below example file defines two fusions:
chr21 39739182 40033704 ERG chr21 42836477 42880085 TMPRSS2
chr14 38033152 38033701 EST14 chr7 13930855 14031050 ETV1